Emergency keeper Cosmin Moti saved two penalties as Bulgarians Ludogorets Razgrad made the Champions League group stage.
Liverpool face holders Real Madrid in the Champions League while Manchester City are again grouped with Bayern Munich.
Andre Villas-Boas is targeting a "spectacular" return to the Champions League with Zenit St Petersburg.
Bayer Leverkusen claimed a shock 2-0 Bundesliga win at Borussia Dortmund on Saturday, while Hannover beat Schalke.
Karim Bellarabi scored the quickest goal in Bundesliga history as Bayer Leverkusen beat Borussia Dortmund 2-0.
Stefan Kiessling is once again being linked with a move to England, but he claims to be happy at Bayer Leverkusen.
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